12. Data integration — Single-cell best practices
Batch effects in single cell RNA sequencing
Batch Effect Correction in Chromium Single Cell ATAC Data - 10x Genomics
A comparison of methods accounting for batch effects in differential expression analysis of UMI count based single cell RNA sequencing - ScienceDirect
Removal of Batch Effects from Single-cell RNA-Seq | RNA-Seq Blog
Comparison of Scanpy-based algorithms to remove the batch effect from single -cell RNA-seq data | Cell Regeneration | Full Text
A test metric for assessing single-cell RNA-seq batch correction | Nature Methods
Batch Effect Correction - 10x Genomics
Removal of Batch Effects from Single-cell RNA-Seq | RNA-Seq Blog
A benchmark of batch-effect correction methods for single-cell RNA sequencing data | Genome Biology | Full Text
Quick start to Harmony • harmony
CellMixS: quantifying and visualizing batch effects in single-cell RNA-seq data | Life Science Alliance
A benchmark of batch-effect correction methods for single-cell RNA sequencing data | Genome Biology | Full Text
A benchmark of batch-effect correction methods for single-cell RNA sequencing data | Genome Biology | Full Text
Batch effect correction of SMART-seq2 dataset. (A) Batch effect was... | Download Scientific Diagram
A benchmark of batch-effect correction methods for single-cell RNA sequencing data | Genome Biology | Full Text
scID Uses Discriminant Analysis to Identify Transcriptionally Equivalent Cell Types across Single-Cell RNA-Seq Data with Batch Effect - ScienceDirect
How to Batch Correct Single Cell. Comparing batch correction methods for… | by Nikolay Oskolkov | Towards Data Science
Perspectives for better batch effect correction in mass-spectrometry-based proteomics - Computational and Structural Biotechnology Journal
Deep learning enables accurate clustering with batch effect removal in single-cell RNA-seq analysis | Nature Communications
Batch Effect Correction in Chromium Single Cell ATAC Data - 10x Genomics
36. Batch correction — Single-cell best practices
A benchmark of batch-effect correction methods for single-cell RNA sequencing data | Genome Biology | Full Text
Batch alignment of single-cell transcriptomics data using deep metric learning | Nature Communications
Benchmarking atlas-level data integration in single-cell genomics | Nature Methods
2 Introduction to Single-Cell RNA-seq | Analysis of single cell RNA-seq data
